PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_23445B251.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 316aa    MW: 36425.3 Da    PI: 8.3592
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_23445B251.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.91.2e-211194190
                   FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                           k+Y +YA +vGFsvrk    k+ ++g   +r +vCs+eg+r+++  k     r+ +etrtgC a++ + ++ +gk++vt+++++HnH+la
  Traes_2DL_23445B251.2 11 KYYVSYAGNVGFSVRKGLWDKTAKSG-SRSRFYVCSREGFRAKNLPK-----RPYPETRTGCPARFSIMLTPSGKYRVTEFVQDHNHQLA 94
                           69********************8888.8999***********98877.....9***********************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-181194IPR004330FAR1 DNA binding domain
PfamPF105512.4E-29191284IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MVFESEEKAC KYYVSYAGNV GFSVRKGLWD KTAKSGSRSR FYVCSREGFR AKNLPKRPYP  60
ETRTGCPARF SIMLTPSGKY RVTEFVQDHN HQLAGPIDIG MLKSQRLLSK VQSGNGNAIS  120
IPPRYKNYLR TKSTKDMNAG DFRDLTDYFR SMKSDNPSFY YAIQVDENDK AANVFWADAR  180
SIFDYHYFSD VICFDMTYKL NDYSRPLALF LGMNHHRQMV IFGAAFLYDE TAESFKWLLE  240
TFKSAMCGKQ PKTILTDRSA ALKEALDLAW PGTVHRYCLW QIYQDAVKSL AHVFCISEEF  300
THDFSHCVFD VEDGQE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2485280.0AK248528.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf51g04, mRNA sequence.
GenBankAK3544720.0AK354472.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1007L07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240422.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
TrEMBLA0A096UMX20.0A0A096UMX2_WHEAT; Uncharacterized protein
TrEMBLW5APT70.0W5APT7_WHEAT; Uncharacterized protein
STRINGMLOC_74600.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-71FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]